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2015 Archive, Vol. 12, No. 2


Synthetic Biology Open Language (SBOL) Version 2.0.0

Bryan Bartley, Jacob Beal, Kevin Clancy, Goksel Misirli, Nicholas Roehner, Ernst Oberortner, Matthew Pocock, Michael Bissell, Curtis Madsen, Tramy Nguyen, Zhen Zhang, John H. Gennari, Chris Myers, Anil Wipat and Herbert Sauro
2015-09-04, Standards in Systems Biology

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath and Darren J. Wilkinson
2015-09-04, Standards in Systems Biology

The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1

Claudine Chaouiya, Sarah M. Keating, Duncan Berenguier, Aurélien Naldi, Denis Thieffry, Martijn P. van Iersel, Nicolas Le Novère and Tomáš Helikar
2015-09-04, Standards in Systems Biology

The Systems Biology Markup Language (SBML) Level 3 Package: Flux Balance Constraints

Brett G Olivier and Frank T Bergmann
2015-09-04, Standards in Systems Biology

SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3

Lucian Paul Smith, Michael Hucka, Stefan Hoops, Andrew Finney, Martin Ginkel, Chris J Myers, Ion Moraru and Wolfram Liebermeister
2015-09-04, Standards in Systems Biology

The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core

Ralph Gauges, Ursula Rost, Sven Sahle, Katja Wengler and Frank Thomas Bergmann
2015-09-04, Standards in Systems Biology

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

Michael Hucka, Frank T. Bergmann, Stefan Hoops, Sarah M. Keating, Sven Sahle, James C. Schaff, Lucian P. Smith and Darren J. Wilkinson
2015-09-04, Standards in Systems Biology

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2

Huaiyu Mi, Falk Schreiber, Stuart Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly Sorokin and Alice Villéger
2015-09-04, Standards in Systems Biology

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2

Anatoly Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart Moodie, Falk Schreiber and Alice Villéger
2015-09-04, Standards in Systems Biology

Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3

Stuart Moodie, Nicolas Le Novère, Emek Demir, Huaiyu Mi and Alice Villéger
2015-09-04, Standards in Systems Biology

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2

Frank T Bergmann, Jonathan Cooper, Nicolas Le Novère, David Nickerson and Dagmar Waltemath
2015-09-04, Standards in Systems Biology

COMBINE Archive Specification Version 1

Frank T Bergmann, Nicolas Rodriguez and Nicolas Le Novère
2015-09-04, Standards in Systems Biology

The CellML Metadata Framework 2.0 Specification

Michael T. Cooling and Peter Hunter
2015-09-04, Standards in Systems Biology

The CellML 1.1 Specification

Autumn Cuellar, Warren Hedley, Melanie Nelson, Catherine Lloyd, Matt Halstead, David Bullivant, David Nickerson, Peter Hunter and Poul Nielsen
2015-09-04, Standards in Systems Biology

Specifications of Standards in Systems and Synthetic Biology

Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris Myers, David Nickerson, Björn Sommer, Dagmar Waltemath and Stephan Weise
2015-09-04, Standards in Systems Biology

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